Basic Information
VIS ID
TVIS42000258
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
53717
Orient
+
Integrated sequence
CCCCGCGACCCGCTTGGGGTCCAACGTGGCCAGAGCCAACCTCAGCTCCTCCATGCCATCCATGGAGTTCTGGGCCATGCCCTCGACTTCCAGGAGCCGT| |GTTAGCTCATGAATTTCACCGTCAGCCGCAGCGGCTAGGTTCAGCCAGGCACCCGCGCCCCCAGCTAAGGCCAGGGCTCCTTCGGAAAGACCCCGCACGG
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
105130374/105794673 (Hg38)
End
105130374/105794673 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5F
Nearest miRNA
hsa-mir-10397/Upstream/4978108; hsa-mir-103a-1/Downstream/4719156;
Nearest TSS
ENST00000502646/Upstream/401703; ENST00000513676/Downstream/1186196;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2534824, chr5-CpG: 253/Downstream/1874756
Upstream sequence
ctgacctcatgatctgcctgcctcggcctcccaaagtgctgggattacaggcatgagccaccgcacccgaccTAAACTTAATTCTTAATAGCAAAATATT
Downstream sequence
TAACATTTTAGTCTATAGGCAAATTTGCTGAaattcagaacatctctggagcataatcccagctccagagatctctagtttggctgaggcatttgttgtg
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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