VISDB Viral Integration Site DataBase

VIS ID

TVIS42000260

Fusion event

EBV-SNX24 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

91295

Orient

+

Integrated sequence

TCCAGATTCAAATCCTCTGTCATGGACTCTAGTGTTGTGGTCAGTTCGTCCAAATGGCCACGAGGGGGCGGGTGGCTCAGGTCCATCTGTCCACATATGG| |CTGCTTCCTCCTTCTGGGGAATAACAGTGTCAGCCATCTCCCTTAGGGCCTTCACGGCCTGACTGGTTTCTTCATCAGGGTCCTCCAACAGATGACTTGC

Chromosome

chr5

Cytoband

q23.2

Reference genome

Start

End

122258319/122922624 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-651-3p ; hsa-mir-145-5p ; hsa-mir-223-3p ; hsa-mir-29a-3p ; hsa-mir-29b-3p ; hsa-mir-29c-3p ; hsa-mir-6809-5p ; hsa-mir-340-5p ; hsa-mir-555 ; hsa-mir-4745-5p ; hsa-mir-4481 ; hsa-mir-4693-3p ; hsa-mir-4740-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-32-3p ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-4698 ; hsa-mir-3140-3p ; hsa-mir-7-2-3p ; hsa-mir-5688 ; hsa-mir-7-1-3p ; hsa-mir-495-3p ; hsa-mir-21-3p ; hsa-mir-3591-3p ; hsa-mir-874-5p

Nearest miRNA

hsa-mir-10397/Upstream/3767908; hsa-mir-103a-1/Downstream/6175064;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/76638, chr5-CpG: 136/Downstream/113250

Upstream sequence

CTGCGTTCTTCACAGTTTGTGCATCTCTCTACTCTCGGCCTGTGGCCACGCTGGATTAGAATAAATAATGATGGCAGGTCTCATGAACACCAAATCCAtg

Downstream sequence

TATAACTTCATATTCTGCAGTtgccatcctctcaatgctgccttctctgagcagtttattgaaaattacaatttttcccccagtggtcctactttctttt