Basic Information
VIS ID
TVIS42000261
Fusion event
EBV-LINC01170 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
134155
Orient
-
Integrated sequence
CGGCACATTCGCGGACAATAAGATTTACAACCTGTTTGTGGGAGCGGGACTACTGCCCACGACGGCCGCGCTGAACGTGCCCGGGGCGGCGGGTCGGGAC| |CGGGACCTGGTGTACCGGATCGCCAACCAGATCTTTGGGGAGGATGTGCCCCCCTTCTCATCTCACCAGTGGAACCTGCGCGTAGGTTTAGCCGCACTCG
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
123400124/124064431 (Hg38)
End
123400124/124064431 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01170
Nearest miRNA
hsa-mir-10397/Upstream/4909715; hsa-mir-103a-1/Downstream/5033257;
Nearest TSS
ENST00000502646/Upstream/476006; ENST00000510004/Downstream/330608;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/428117, chr5-CpG: 48/Downstream/587274
Upstream sequence
ttatgaagtcagtaactagagcaaacccctttccttcagaaatacatgctgagctgagccctatgacaaactcctgtggtcccagctactgaaggttgag
Downstream sequence
cacttgaggtcaggagtttgagaccagcctggccaacatggcaaaaccccttctctactaaaaatacaaaaattagctgggtgtggtgacactcctctgt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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