Basic Information
VIS ID
TVIS42000263
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
116726
Orient
+
Integrated sequence
AACGGGAGATGGAACTCCAGCTTACTATACGAGCACAGGTGGCGAGGATTGGGCTCATCCGTGCCCCCCTCCCCCCGCGGGAGGCTCAATCGGCCTTGGT| |CTGACATTCCACCCCGGCCAGGTCCAGGAGGGTGCAAATATTCTCCAGGCGCTGCACCTCAGAGACCTCCTGCTCAAAGAGACCTCCCACCGCCACGTAG
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
126027660/126691968 (Hg38)
End
126027660/126691968 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/7537252; hsa-mir-103a-1/Downstream/2405720;
Nearest TSS
ENST00000502646/Upstream/59434; ENST00000492190/Downstream/84518;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/90560, chr5-CpG: 202/Downstream/84569
Upstream sequence
ATATTCTTTAATTCAAATATTATAGCCTTTTATTTTACATGCTGTTTATTGCTTTTGAGTACTTCTCAAAGTGAATTAAAAAATCATATTTTCAGAAAAC
Downstream sequence
TGTTTAAAGACTCCAGTATGCggccggcgtggtggctcacgcctgtaatcccagcactttgggaggtcgaggcgggtggatcacgaggtcaggagatcga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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