VISDB Viral Integration Site DataBase

VIS ID

TVIS42000265

Fusion event

EBV-FSTL4 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

117496

Orient

+

Integrated sequence

CGGACGCCTAGCCTCCTCCCTCTACGTGTACGTTGATCCGGCCTATACCAACAACACATCCGCATCAGGCACCGGAATCGCCGCCGTGACTCACGACAGG| |GCGGACCCTAACAGGGTCATCGTCCTGGGCCTGGAACACTTCTTCCTCAAGGACCTAACAGGGGACGCTGCCCTCCAGATCGCCACCTGCGTCGTGGCCC

Chromosome

chr5

Cytoband

q31.1

Reference genome

Start

End

132734314/133398622 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3691-5p ; hsa-mir-432-3p ; hsa-mir-6508-3p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-1193 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-4472 ; hsa-mir-3175 ; hsa-mir-4447 ; hsa-mir-6878-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-7515 ; hsa-mir-194-3p ; hsa-mir-1296-3p ; hsa-mir-7845-5p ; hsa-mir-4475 ; hsa-mir-4662b ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-4452 ; hsa-mir-183-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-4742-3p ; hsa-mir-6780b-3p ; hsa-mir-4780 ; hsa-mir-7856-5p ; hsa-mir-4503 ; hsa-mir-6792-5p

Nearest miRNA

hsa-mir-10397/Upstream/1033023; hsa-mir-103a-1/Downstream/28974;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/345945, chr5-CpG: 192/Downstream/212431

Upstream sequence

TTTTGCTCCTGAGGGCTGTGGTGTAACACGAAAGAACGTTGCTGTAGGCTTCCAGCCGTGGGATTCCAGGGCTGTCTTTGCCTTGTGCTGCTGGACAGAG

Downstream sequence

ccatgcaccaggcagcgtgctaagtggtgcttgtgcagcccctccttcacttctctccatggctgcagcaggtgggtactgccattagtcccattttaca