Basic Information
VIS ID
TVIS42000267
Fusion event
EBV-chr5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
163258
Orient
-
Integrated sequence
GAGAAGCAGGGTCGGCGGCAGGGGTCCCAGGTCCCCTCCTGCAGGGTCCCCAGGCCGTGGGTCATGTAGAAACTGTTAAAGAGACTCTCCTTGCCCTGAC| |CGGTTGACTTCGAGACCCCCGAGACGTAGAGGACGGAATTGGTGGCAAAGATCTGCGTGGACACGTGGGGGGCCAGGCTGGCATTATATCGGTGTAACGC
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
GRCh37/hg19
Start
169512928/170085924 (Hg38)
End
169512928/170085924 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5G
Nearest miRNA
hsa-mir-10397/Upstream/57358; hsa-mir-10523/Downstream/1300732;
Nearest TSS
ENST00000502646/Upstream/10480; ENST00000449804/Downstream/19973;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/448226, chr5-CpG: 31/Downstream/20152
Nearby gene
DOCK2(-2542) ;
Upstream sequence
TTTCACGGCCTCGCAAGGAAAGCAGGTGCCTTCTCCACAGAGACTCTTGGTGGGCTCCTCGATTTGGGGTCATCTGCTCCTGCAGCCTGGGCTCGCGGGG
Downstream sequence
GATTCATACTTTGGTTTGATCTAGAGCACTACATTCCCTTCCTTTCCTTAAGGGAGGGGTATTTTTAGCCTTTATTCCTAAGCATGGAGTAGAAGTCTTC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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