Basic Information
VIS ID
TVIS42000269
Fusion event
EBV-PDLIM7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
82368
Orient
-
Integrated sequence
CAGAGTGTTAGGCCAGGGGTAGCGCAGTCACAATATTTTGACCTCCCCTTAACTCAACCCATTAACCATGGGGCACCCGCAGCCCATTTCCTCCATCAGC| |CACCAATGGAGGGGCCGTGGGTACCCGAGCAGTGGATGTTCCAAGGTGCCCCCCCTAGCCAAGGCACTGACGTGGTCCAACATCAGCTGGATGCTTTGGG
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
176914487/177487486 (Hg38)
End
176914487/177487486 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5G
Target gene
PDLIM7
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-mir-24-3p ; hsa-mir-132-3p ; hsa-mir-17-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10397/Upstream/857986; hsa-mir-1229/Downstream/2310792;
Nearest TSS
ENST00000502646/Upstream/2472; ENST00000506025/Downstream/5086;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/13851, chr5-CpG: 87/Downstream/4087
Upstream sequence
atggtggcaccactgcactccagcctagttgacagagtgagatcgtctcaaataaataaataaataaaaTAAAATATTTGCCCATTAAGCCTTGGAAACA
Downstream sequence
tcttgcaccatgagtggtaagtaagcaggtgctgccaacagtcaagcaacaaggcggagcctgggtccaccagatcagtcccagaccacccaccccggga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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