Basic Information
VIS ID
TVIS42000270
Fusion event
EBV-BLOC1S5-TXNDC5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
161865
Orient
-
Integrated sequence
GCTGATGTAGAACTGGGTCTGGCCGCACGCCTTCAGGATGGCGTTGTTGAGCCTCTGCTTGGCGTAAGTGACCAGGTTGCCAGGCACCACATCTATGACG| |TTGCTCTCTTCGTGGGCCCGGGAGCCCCCGTCCACAAAGAGGGCCAGGTCAGAGTACTCCTCCGCGCTGGCCCCGCTGGGGACAGGGACCGAGCGCCGCC
Host Sequence
Chromosome
chr6
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
7973868/7973635 (Hg38)
End
7973868/7973635 (Hg38)
Orient
+
Location type
Intronic
Target gene
BLOC1S5-TXNDC5
Nearest miRNA
hsa-mir-3691/Upstream/1804200; hsa-mir-10398/Downstream/2466082;
Nearest TSS
ENST00000381078/Upstream/62821; ENST00000645232/Downstream/44424;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/62450, chr6-CpG: 41/Downstream/12465
Upstream sequence
tgaaacccccacttgatcatagtgaattatctttttgatatgctgttggattcagttcgctagtattttgctgaggatttatgtttctatattaatcaca
Downstream sequence
agttggttgaatctgcaggtgggaagcctaagggtagggagggccgacAGTACTGTATTTATAAATGGTGTAATTAAGTTACTTAGTACTGACATGGGAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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