Basic Information
VIS ID
TVIS42000271
Fusion event
EBV-ADGRF5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
133864
Orient
+
Integrated sequence
TGAGGGCACCACCCAGGACTTTTTCTCAGACGTCAGGCACCTGCCAGACCTCCAGGCTGCCCTGATCCTCTCGGTGGCCTACCTGCTACTCCAGGGGGGC| |TCCTCACACCAGCAGCGCCCCCTCCCTGCCTCACGGGAAGAGCTGCTGGAGCTGGGCCCGGAGAGCCTAGAGAAAATCATCGCCGACCTCAAGGCCAAGT
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
46902085/46934348 (Hg38)
End
46902085/46934348 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADGRF5
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10398/Upstream/1736578; hsa-mir-10524/Downstream/5210001;
Nearest TSS
ENST00000381078/Upstream/12371; ENST00000477159/Downstream/20595;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/198769, chr6-CpG: 123/Downstream/374371
Upstream sequence
gcaaggcaccttcttcacaaggtggcaggagaaacaaccaaatacttataaaaccagcagatcttgcgagaactcactcactatcatgagaatagcatgg
Downstream sequence
ctttcccctccattattttcagcaataatccttatttgcttgactaattcttttgatttaaagcaattgactgaaaaagaaaacattttactttatgcta
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate