Basic Information
VIS ID
TVIS42000275
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
116974
Orient
+
Integrated sequence
TCTCCAAATTCTCTCTCCCCAATAGTGCCTCGCTTCTTATCCTGTCTTTCAGAGCATCCGGGGGCAGACATTTCACCTCTTGTTTGTGGACGAGGCTAAC| |TTTATCAAGAAGGAGGCCCTGCCGGCGATCCTGGGCTTTATGCTTCAGAAGGATGCCAAGATTATCTTCATCTCGTCTGTGAACTCGGCTGACCAGGCCA
Host Sequence
Chromosome
chr6
Cytoband
q12
Reference genome
GRCh37/hg19
Start
67944243/67234350 (Hg38)
End
67944243/67234350 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/9844138; hsa-mir-10524/Downstream/4142610;
Nearest TSS
ENST00000381078/Upstream/1527125; ENST00000449928/Downstream/654989;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1139412, chr6-CpG: 37/Downstream/1400490
Upstream sequence
ctcaagtgatcagcccacctcggcctcccaaagtgctgggattacaggtgtgagccgctgtgcccagcttttttttgctttttttttttttttttttttt
Downstream sequence
aaGAAATGTGTAAATAATTGCTAACTGTTTCTTCGCTTTCTAATGAATAATTTTACCAACTTCCATAAACTTCAGTTGTTCTATGTAATTATAAAATGTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate