Basic Information
VIS ID
TVIS42000276
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
58919
Orient
-
Integrated sequence
GACGAGGCCAAAGATCTCCGCCGAGCGGTATATGTGCACGCGCCCACCGCCCCTCAGGACCACGGAGCTGGGCACGTCCGTCAACTGGGCCATCTCGTGC| |CCCTTGAGGATGCCGCTCTGGCGCATGAGGGCATCCAGCCGCGCCCCCTCGTCCAGGACCTCGTCCAGCTCAGGGCGGGAGGTCAGGGGGCGGCCGGCCA
Host Sequence
Chromosome
chr6
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
84977059/84267341 (Hg38)
End
84977059/84267341 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/5728032; hsa-mir-1202/Downstream/6045401;
Nearest TSS
ENST00000381078/Upstream/39706; ENST00000591225/Downstream/203563;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/39331, chr6-CpG: 129/Downstream/495643
Upstream sequence
ttagaagatatttgaactgaacaaagataaaagcacaacaaactgaaatttgtgagatgcagctaatgtagtgtttaaagagcattttataacaccaaaa
Downstream sequence
TGTATTTGGAGGACAGAGTAcctctttcttgaacagtgatataatcatcctgtcaatattgatctttctgtcttattctctttcccatacttccactggt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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