Basic Information
VIS ID
TVIS42000277
Fusion event
EBV-LOC105377899 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
78767
Orient
-
Integrated sequence
GGGCCGTGCCAAGACCCGAGACAGTAATGTCAAATGTCCGATTGCTCGCAAATGCACCAGAAATATTTTCACAACCCGAAGGTGTCCCCGAGGTGAGAGT| |CCATTTGCACTTAAAGTCAGTTTCAGTGTTGTTTGGCCAGGCCCAAAAGGCAGTCACTGTAACATTTGGCGAGTTTGCGTCCTCAGAAGTGACCATTGGC
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
GRCh37/hg19
Start
94263262/93553544 (Hg38)
End
94263262/93553544 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105377899
Nearest miRNA
hsa-mir-10398/Upstream/2031807; hsa-mir-1202/Downstream/4470987;
Nearest TSS
ENST00000381078/Upstream/133997; ENST00000424678/Downstream/333356;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/133585, chr6-CpG: 69/Downstream/2023821
Upstream sequence
cctgtagtacaaacaaaagttctcaattattattgtcattctaatttcatcaataaaagttttgtggaaatttgttttctctcttgttatgtaaatccct
Downstream sequence
TGACAACTGAAGTGTCACCTATTGAAAATTCTTGTGAGTCATGATGTCTCCCTCTTTAAGTGTTAATATTGATAGTGATtgtaggagatggctgcagaga
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate