Basic Information
VIS ID
TVIS42000279
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
5063
Orient
+
Integrated sequence
ACGTTCCTCGACAAGTACGTGGGTCTGGCCATCGGAGGAGTTCATGGGGCCAGGGACTCTGCCCTGGCAGGCCGTGCCACCGTGGCGCTGATTAATCGTT| |TCCCCGCCCTGCGTGACGCTATTCTAAAGTTCCTCAACAGGCCAGATACGTTCTCGGTGGCCTTGGGGGAGCTGGGGGTGCAAGTTTTGGCTGGCCTGGG
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
106474931/106027056 (Hg38)
End
106474931/106027056 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA6F
Nearest miRNA
hsa-mir-10398/Upstream/6902360; hsa-mir-1202/Downstream/757069;
Nearest TSS
ENST00000381078/Upstream/134015; ENST00000424894/Downstream/59264;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/32019, chr6-CpG: 30/Downstream/59205
Upstream sequence
gaacatcaatgcaaaaatcctcaataaaatactggcaaaccggatccagcagcacattaaaaagcttatccaccacgatcacgttggcttcatccctggg
Downstream sequence
CACCACCCACCTTATTCTTCCACAATATGTCCTATGTGATCTATTCGAATCTCATTAAACTGATTTACTGGGCCCGCTGGCTCTGCTCTCCCTCAGTTTA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate