Basic Information
VIS ID
TVIS42000281
Fusion event
EBV-LOC105377950 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
38208
Orient
-
Integrated sequence
GGGAAAACATAACCGCCGCCATCCCATGGGGAGGGTAGAGGCGGTTGACATGTAGGTGAGTAGTGTAAGAAGCATGGCGAAGTAGACAGGTTACTTTTAG| |AGTGTAGTGTACAGGGCCGGGCGCAACAGTGCCACCAACCCGGGGTCTGAGCATTCCATGGGCAGCAGGGACACTGCACTACCGCCAGGTCCTGGGGCAG
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
113214170/112892968 (Hg38)
End
113214170/112892968 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
LOC105377950
Nearest miRNA
hsa-mir-10398/Upstream/6108748; hsa-mir-1202/Downstream/6176079;
Nearest TSS
ENST00000381078/Upstream/411332; ENST00000415883/Downstream/474976;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/525440, chr6-CpG: 205/Downstream/965590
Upstream sequence
AGAAAGCAGTGGGCACATGCTGCTAAGGATGAGACAAGATGATGGCTTTTGAAGAACTTCAGCATGTCTCAAATGACCATCCCTACCCCCTTCATTCTAA
Downstream sequence
atcactatagtaaggtggttaaattaaattatctttaagagttctttccaattccagcatgtgattcATCCTAAACATCAGGTTTAAAAGTTTCTAATAG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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