Basic Information
VIS ID
TVIS42000283
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
67509
Orient
+
Integrated sequence
ACACCACCCCCCAAGGACTGCCCGCTCACCTACATGACTAGCATCAAGCAAACTAATTTCTTTGAGCAAGAGAGTTCCGATTACACCATGCTGGTGGTAG| |ATGACCTTTGAGTCAGGGTGGCTACTTGCTCAGGTTTCTGGGCATAAATTCTCCTGCCTGCCTCTGCTCTGGTACGTTGGCTTCTGCTGCTGCTTGTGAT
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
137514975/137193838 (Hg38)
End
137514975/137193838 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/1954582; hsa-mir-1202/Downstream/1241375;
Nearest TSS
ENST00000381078/Upstream/20190; ENST00000642830/Downstream/25190;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/148849, chr6-CpG: 59/Downstream/25151
Nearby gene
IFNGR1(+3646) ;
Upstream sequence
ATGTCTCCTTTTCCCTCTGAAACATTGCTTTTCTCAAGCCCTAAATTAGTAATCAGCTCATGGGTGTACCTGAAGGTTATGTAAGTTAAGTTGAAGGCTG
Downstream sequence
TAGAGTAAGTATTGCATCTCATAAATGAAGCTAACTAATGACTATACAAACAAAGCTGGCACTTATTTTCTAAGTCATCCACTTATATCCTTATCAGGCA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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