Basic Information
VIS ID
TVIS42000285
Fusion event
EBV-chr6 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
139420
Orient
-
Integrated sequence
CGGAGAAGGGGTTAACAAACCCGTGGGGGGTCTTAGTGGAAGTGACGTGCTGTGAATACAGGTCCATAGCACCGCTATCCACTATGTCTCGCCCGGGCTA| |TATGTCGCCTTACCTCCCCTATATAGTCACGACCCCACCGAACCAGGCATGATGTAGAATAAAATTTTATGCATCATCTTCTAATCTGTGCCGCTTGGAG
Host Sequence
Chromosome
chr6
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
149508391/149187255 (Hg38)
End
149508391/149187255 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/8503372; hsa-mir-1202/Downstream/1915420;
Nearest TSS
ENST00000381078/Upstream/121079; ENST00000451095/Downstream/30671;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/308543, chr6-CpG: 113/Downstream/129627
Upstream sequence
ttgcatgtgtatatttagagcgcattgaagcccacagtagaaaaggaaataacttcacctaaaacctagacagaagcaatctcagaaactactttgtgat
Downstream sequence
gatattgatctgcagttttcttttttgttgttgttatgtcctttcctggttttggtattagagtggtactggcttcatagaatgatttagggaggatcct
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate