Basic Information
VIS ID
TVIS42000290
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148671
Orient
+
Integrated sequence
CCAGGGACGGCTGACGATGTGTTTAGTCTGCCACTTGCATCCGGCGCTTTGGTTACTCGGGAGACTAATGGGGGGTGTGGTATGGCACAGGCTGGGGGTG| |AGTCTGGGGATGTCCCTGGGCGTTGCTGCAGCCCATTCGCCCTCTGGGGATGAGATGTTCAGGGGTGGCCGGTACCCTACGCTGCCGATTTACATAATAT
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
19202421/19162798 (Hg38)
End
19202421/19162798 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1302-6/Upstream/1035489; hsa-mir-10399/Downstream/542560;
Nearest TSS
ENST00000635602/Upstream/17377; ENST00000412563/Downstream/190736;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/17388, chr7-CpG: 44/Downstream/545976
Upstream sequence
gtggcatttctatacaccgataatgaaccagctgaaaaagaaatcaagaaagcaatctcatttactatagctagtaaaaaaaatcaaataattgagaata
Downstream sequence
AAAACCCAAATCTCAAATTACAGCACACTGGATATATTTTGTTCATCAGAGAGCTGAATTTGCTAAGAATATTCATCCATAAAGGGAAGGAAAAATGTAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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