Basic Information
VIS ID
TVIS42000291
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148672
Orient
+
Integrated sequence
CAGGGACGGCTGACGATGTGTTTAGTCTGCCACTTGCATCCGGCGCTTTGGTTACTCGGGAGACTAATGGGGGGTGTGGTATGGCACAGGCTGGGGGTGA| |GTCTGGGGATGTCCCTGGGCGTTGCTGCAGCCCATTCGCCCTCTGGGGATGAGATGTTCAGGGGTGGCCGGTACCCTACGCTGCCGATTTACATAATATA
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
19202423/19162800 (Hg38)
End
19202423/19162800 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1302-6/Upstream/1035491; hsa-mir-10399/Downstream/542558;
Nearest TSS
ENST00000635602/Upstream/17379; ENST00000412563/Downstream/190734;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/17390, chr7-CpG: 44/Downstream/545974
Upstream sequence
taagaagtctttagcttcctgaatggcacctggaatatagcagatgctcaataaatatttgttgcatgaatgtgggatgaagagaacaaccaagaagact
Downstream sequence
AACCCAAATCTCAAATTACAGCACACTGGATATATTTTGTTCATCAGAGAGCTGAATTTGCTAAGAATATTCATCCATAAAGGGAAGGAAAAATGTATAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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