Basic Information
VIS ID
TVIS42000293
Fusion event
EBV-LINC01162 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
127378
Orient
+
Integrated sequence
AAGACAGTCACCTATTTTCCTGACCCTCCTGAGGCACATCCGCCGACGTCTGGGCCTGGGCCGTGCTTCCGTAAAACGAGAGATTACCCTTCTCCTGGCC| |CACCTGCGCAAAAAGACAGCCCCCATCCACTGCCGTGATGCTCAAGTGTAAGCAGCCCGGGGCCCGCTTCATTCACGGGGCCGTGCACCTGCCATCGGGA
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
20944991/20905372 (Hg38)
End
20944991/20905372 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01162
Nearest miRNA
hsa-mir-1302-6/Upstream/1199936; hsa-mir-10399/Downstream/565686;
Nearest TSS
ENST00000635602/Upstream/69941; ENST00000440636/Downstream/522662;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/106787, chr7-CpG: 104/Downstream/521656
Upstream sequence
AAGCCTGTGGGCAACATTTCTATTGACAGGGTTAATTCTGGCATAATTTAAAAGAGTTTAATTAATCATGGAGTTAAGCATAGAGAAAGGATTCCTGGCA
Downstream sequence
agaaaccactatacacctaccagattgtctaaaataaagagtacaataatgaatgctaaaataaataataataataaaaaaGATCTTTGAGGGACTCCTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate