Basic Information
VIS ID
TVIS42000294
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
67983
Orient
-
Integrated sequence
GGGCGCACCTGTGTCCTGGGCAAGGAGCTGTTTGGCTCGGCTGTGGAGCAGGCTTCCCTGCAATTTTACAAGCGGCCACAAGGGGGTTCCCGGCCTGAAT| |TTGTTAAGCTCACTATGGAATATGATGATAAGGTGTCCAAGAGCCACCACACCTGCGCCCTGATGCCCTATATGCCCCCGGCCAGCGACAGGCTGAGGAA
Host Sequence
Chromosome
chr7
Cytoband
p15.3
Reference genome
GRCh37/hg19
Start
24177023/24137404 (Hg38)
End
24177023/24137404 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/2666258; hsa-mir-10399/Downstream/1812515;
Nearest TSS
ENST00000635602/Upstream/240069; ENST00000407573/Downstream/118315;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/456346, chr7-CpG: 123/Downstream/146535
Nearby gene
RNA5SP228(-4567) ; LOC107986777(+3878) ;
Upstream sequence
taccaagaatacataaagagcacgtcaattcagcaggaaaaagcaccaaacagaaaaatttgcaaaggatatgaataggcagtacagggtggtggaaacc
Downstream sequence
GGTACAGAAGAAGGAGGAAGAGCAAAGGGATAAAAGCAGAGGAGACATGCTGTCTCTTTCTCCTGGGTTGATTGCCTGGGAACAGGCACCTCATGGGGTG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate