Basic Information
VIS ID
TVIS42000295
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
40657
Orient
+
Integrated sequence
TAAGGTTTGCTCAGGAGTGGGGGCTTCTTATTGGTTAATTCAGGTGTGTCATTTTAGCCCGTTGGGTTTCATTAAGGTGTGTCACCAGGTGGGTGGTACC| |TGGAGGTTATTCTATTGGGATAACGAGAGGAGGAGGGGCTAGAGGTCCGCGAGATTTGGGGTAGGCGGAGCCTCAGGAGGGTCCCCTCCATAGGGTTGAA
Host Sequence
Chromosome
chr7
Cytoband
p14.1
Reference genome
GRCh37/hg19
Start
42600401/42560802 (Hg38)
End
42600401/42560802 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1183/Upstream/5641370; hsa-mir-10399/Downstream/590093;
Nearest TSS
ENST00000635602/Upstream/322932; ENST00000432845/Downstream/145645;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/67118, chr7-CpG: 74/Downstream/350815
Upstream sequence
aaagtagctaccagccccatgcaagtccaaaatccagcagtgcagtcaagtcttaaagttccaaaattatctcctttgacgccatgtctcgcatctgggt
Downstream sequence
ttgggggactgttgagaaggtatgattggttttgaaatatgaggacatgagatttgggaggggctgggggGAAtgatatggtttggctgtgtccccaccc
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate