Basic Information
VIS ID
TVIS42000296
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
56237
Orient
+
Integrated sequence
AAAATCCATCACTGTTGGGAGGCTTGGGTCCTCAAGGTAGGAGAGATAATCGGAGGCCGCCGAGGCCACCTTGTCCCTGATGTCCGCCGTACACCTGCGC| |ACGTGCAGGGCCGCATTCTTGGACCGGACGGCCACGTTGTGGACAAAGGGGGGCACTGAGGCGGCGGGAGGGGCCCCATACTCTATCGCTGTCAACAGCG
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
56199155/56131462 (Hg38)
End
56199155/56131462 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7A
Nearest miRNA
hsa-mir-1183/Upstream/11249662; hsa-mir-10399/Downstream/824323;
Nearest TSS
ENST00000635602/Upstream/15062; ENST00000566570/Downstream/351833;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/14990, chr7-CpG: 95/Downstream/43251
Nearby gene
LOC105375288(-5059) ;
Upstream sequence
ATGAGCATAAACCTACCTTGCTGATGGTTAATTTCCAACATTATAATAATACACTTCACCCTCTCTTCAGAAGTGGCtgtattagtctgctcttgttttg
Downstream sequence
tatttgttgGTTTTATTGATTTTCGCCCCCCTCTTGGAAGACACTATCCTTCAGAAAGGACTGAAAAGTCTGCATTTTAGATATTTATTCAACTGCCATT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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