VISDB Viral Integration Site DataBase

VIS ID

TVIS42000298

Fusion event

EBV-MAGI2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

94638

Orient

+

Integrated sequence

GTGGCTTTACGTGGTCATGTGCAGCTTGCATACGACGCCCGTGTCCTGACGCCTGACTTTCACGAAATCCCTGACCTCGATGACTCCGATGCTGTTTTCG| |CACGCACCTTATTGGCAGCCTTATTTCACCTCAATATGTTCTTTATTCTCAAAGATTACATAACACAAGACTCCATGAGCTTGAAGCAGGCCCTCAGTGG

Chromosome

chr7

Cytoband

q21.11

Reference genome

Start

End

78732554/79103238 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-655-3p ; hsa-mir-487b-3p ; hsa-mir-134-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-3944-5p ; hsa-mir-5690 ; hsa-mir-4660 ; hsa-mir-4704-5p ; hsa-mir-3912-5p ; hsa-mir-487a-3p

Nearest miRNA

hsa-mir-10525/Upstream/3187969; hsa-mir-10399/Downstream/13100777;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/1062498, chr7-CpG: 26/Downstream/349011

Upstream sequence

agtgccgtggggaagctcgccctgctttctcccagtccaggagttttctggggccagggcctctcagagggagatggagagccctgagagacgggtgcct

Downstream sequence

AAAATGAAGAAGCACTTTTGTGAGACTCTTATCCAACTAGAGGCATCTCTTTCACCTGAGTTCCTGTCCTAGCCTGCTCCCTGTTTTTTATACTGTTCTT