Basic Information
VIS ID
TVIS42000299
Fusion event
EBV-LOC101927378 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
73332
Orient
+
Integrated sequence
GTCGGGGTGGAGACGACCTCCGCCAGGTGGGATGAGAAGGGGTCAGCGGCTGTCATTACAAAGTAGTGCCTGTCTGCAAAATGGCAGAGGAAGACCGGTA| |GCCGCTGCACCCTTCGAAGGACGGTGGGTGGGAGGAATTGTTCCTTGGGATTCCACTGGCCCCGGCAGGTGGCCTGGCCGGCCAAGCATAGAAACCCTTG
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
84183770/84554454 (Hg38)
End
84183770/84554454 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927378
Nearest miRNA
hsa-mir-10525/Upstream/8639185; hsa-mir-10399/Downstream/7649561;
Nearest TSS
ENST00000635602/Upstream/5248; ENST00000422448/Downstream/385791;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/804617, chr7-CpG: 31/Downstream/385468
Upstream sequence
GTCACCTTCCTTTGCTGCATGCTTCAGTCTCTGCTTGAATTTGCACCTGGAAATGGGGTTGAAATACATTTGGTGCAGAACGATAGCATTTCAAACCTGT
Downstream sequence
ACTGTGGGGAACGTGAGGCTGCAACACAGGAAGGACCCATGGGACTGAGAGGAAGGAGAAGCTCAAAGAGGAAGAAAAGAGGCACAACCTGAGAGAATGT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate