Basic Information
VIS ID
TVIS42000302
Fusion event
EBV-STEAP2-AS1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
138017
Orient
+
Integrated sequence
GGGTCACATTGGGGATTATCAGAGAGACGGAGGTGTTGGAGTCATTTACCCATTCTAGGGTAAGGCTATAATTGTAACCCCCGTTAGTTATATGAGTTCC| |GTTGTTGGAAGTAGCTACGGCCAAGGGCAGTTGTCCATCCCCGGGAGTGTATCCCCGGCCCAACTCGATCCGAGAGACCGACTCATTGCTAGGAACGCTG
Host Sequence
Chromosome
chr7
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
89808321/90179007 (Hg38)
End
89808321/90179007 (Hg38)
Orient
-
Location type
Intronic
Target gene
STEAP2-AS1
Nearest miRNA
hsa-mir-10525/Upstream/14263738; hsa-mir-10399/Downstream/2025008;
Nearest TSS
ENST00000635602/Upstream/11417; ENST00000426158/Downstream/32679;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/24240, chr7-CpG: 74/Downstream/32492
Upstream sequence
TCTGTCGCCCAAGCCGCTCTCTGATGGTGCCCTTGGCCTTTCAGCCACGGATATGGGTGTCCCCTCCCCTGGAGAACAGCAGAGTGATGGGGGAGGTGGG
Downstream sequence
TGCTAGGAAAAGAGACACTTAAAAACCCACATCCAGGCATTGTTCAATGACTGCTCATAAATACTTTATGGCAAAATTCTTTCTGGTGGCACAGAAGGCC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate