Basic Information
VIS ID
TVIS42000305
Fusion event
EBV-LOC105375410 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
72603
Orient
+
Integrated sequence
TGGTAGCAGAAGGTTTTGGGGGCCGGCCAGCCCACGTGCAGTGAGTGATGTAAGAGGTTTTGAATGTTGAGGGCATTCTTAACATAGCTGTGCTTGTCTT| |CCTCTTCCGGATGACAGACAAAGAGGCGCAGCTGCCGGCTAAGACCACCGCCCCTGTCCACCTTGTAGGTATGCGGCAGCCGGATGCACCGCCCGGCGTG
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
96036780/96407468 (Hg38)
End
96036780/96407468 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375410
Nearest miRNA
hsa-mir-10525/Upstream/187712; hsa-mir-10399/Downstream/1556190;
Nearest TSS
ENST00000635602/Upstream/85321; ENST00000555308/Downstream/88874;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/85144, chr7-CpG: 38/Downstream/302036
Upstream sequence
aaggtaggcagtctagggctggtgcgatctccactgtgtcactgggctgttgcccttctgtcattctattctgccatcctaggcaAAGCAAGATTGCCCA
Downstream sequence
GATCTTTCATCCTAAGAGCAGATTTCCACCATGTATCTAGATAATCAGGAAGACACAAGTATAAACTGGGTCTGTAAGTTCTTCTACCAGATTTGAAAGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate