Basic Information
VIS ID
TVIS42000307
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
5623
Orient
-
Integrated sequence
CGATGGTCGTCATCTGGCTCTCCTGTGTGACCCCTCACTTTGTACAGACTTTTGGCAATGGGAGCACATTCCCCCCGCCTTTGGGCACCCCACGGGGTGC| |TCCCCCTGGACACTTATGTTTCAAGCAGCTCACCTATGGTCACTCAGGCACGGTCGCCCCTCCGAGTGACCAGTCACCTTCCAGACTATGCATACACTGA
Host Sequence
Chromosome
chr7
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
105728580/106088134 (Hg38)
End
105728580/106088134 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7F
Nearest miRNA
hsa-mir-10525/Upstream/3616603; hsa-mir-10399/Downstream/8565211;
Nearest TSS
ENST00000635602/Upstream/59706; ENST00000609281/Downstream/5118;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/78347, chr7-CpG: 100/Downstream/23523
Nearby gene
SYPL1(+2234) ;
Upstream sequence
tccacagaatactatgcagcaataaaaagaatggatcatgccctttgaaagaacttggatagaactggaggccattatccttagcaaactaatgcaggaa
Downstream sequence
aaatggccaataaatacaggaaaggaccaccaacctaaatagcaatcagagtaacataaattttaaagcatcaaagacacaatttcaaacttatcagatt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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