Basic Information
VIS ID
TVIS42000309
Fusion event
EBV-chr7 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
117581
Orient
+
Integrated sequence
GTGACTCACGACAGGGCGGACCCTAACAGGGTCATCGTCCTGGGCCTGGAACACTTCTTCCTCAAGGACCTAACAGGGGACGCTGCCCTCCAGATCGCCA| |CCTGCGTCGTGGCCCTCGTCTCCTCGATCGTCACCCTGCACCCCCACTTGGAGGAGGTGAAGGTAGCCGTGGAGGGCAACAGCAGTCAGGACTCTGCGGT
Host Sequence
Chromosome
chr7
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
115174404/115534350 (Hg38)
End
115174404/115534350 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7G
Nearest miRNA
hsa-mir-10525/Upstream/880895; hsa-mir-10399/Downstream/1485861;
Nearest TSS
ENST00000635602/Upstream/302995; ENST00000489626/Downstream/141979;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/611575, chr7-CpG: 71/Downstream/675966
Upstream sequence
tgtgtttcatctctctctcactctctacttacatggacgtatatgtacacataaaaaaatttctgagccatttgagaagaagttttagactttgtatctc
Downstream sequence
ctgtagagaaatacctgagactgggtaagttataaagaaaagagacactaatggaAGGCATGTATAGACATTGATTATATATGTCTTCACTAATGTCTAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate