Basic Information
VIS ID
TVIS42000310
Fusion event
EBV-LOC107986838 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
71720
Orient
-
Integrated sequence
TCTTTCTGGGAATCACAAACGATGCCGAGGTAGGGGTTATGACCACGCTGGAGGGCCGTGCAGGTATGGCGTGGGCCGGAGTTGGATCTTCATCCTCCTC| |CTCTGAGGATGAAATCTCTCCATCTGTGGAGTGTTCTTCGCTGCCCTCCATAGGGTCCAGATCGCAGTCTGTGTTGGTGTCTGAGACCGCTTCGAGTTCC
Host Sequence
Chromosome
chr7
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
116055941/116415887 (Hg38)
End
116055941/116415887 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA7G
Target gene
LOC107986838
Nearest miRNA
hsa-mir-10525/Upstream/1762432; hsa-mir-10399/Downstream/604324;
Nearest TSS
ENST00000635602/Upstream/87991; ENST00000393480/Downstream/49389;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/204913, chr7-CpG: 94/Downstream/83598
Upstream sequence
aggagtgaagccacagaccttcgcagtgagtgttacagctcttaaaggtagtgcagacccaaagagtgggcagcagcaagatttattatgaagagcgaaa
Downstream sequence
ATTCAGACTTTCCTCTGGGAAATTTTAGTTATTTTAAAGAATGTAAAGACTAAGTATTTAGTTCAGGAGGAATTCCGTTGAAGCAAATTATGTAAGAACA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate