VISDB Viral Integration Site DataBase

VIS ID

TVIS42000311

Fusion event

EBV-CNTNAP2 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

144937

Orient

-

Integrated sequence

ATAAAATGTCACTAATTCCTCTTACCTGTTTAGGGTATTGTGCAATTCTTCAGCCTGCCTATTTTCAATTTGCCTAAGGTGGCAATTTAAGATGTGGTTA| |ATTAACCATTTTCCTGTCTGACACCACTGCATGGGCAACCGGGTTCCATGGCACATTTAGAGATAAACATAGATGTCTTGTCTTGCTCATGTGCAGAGGA

Chromosome

chr7

Cytoband

q35

Reference genome

Start

End

146868074/147170982 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-99b-5p ; hsa-mir-4444 ; hsa-mir-6079 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4428 ; hsa-mir-571 ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u

Nearest miRNA

hsa-mir-10399/Upstream/3788182; hsa-mir-153-2/Downstream/207035;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/1053990, chr7-CpG: 33/Downstream/1168420

Nearest cancer related gene

CNTNAP2(TSG, No orient, 0)

Upstream sequence

TAAAGACAAGTAGTGGGACAGAAGTCTCCAGTGCAAGGACAAAGTGTTGCCCTAGAAGGTGAAACTTGATAGGGGCAAAAGTTATTTTCAGAGTGTGGTG

Downstream sequence

atagctgggctctgtcagatctgttccacacacaaatgtccccagctccatgtctgctgaatccccgcctctatcaaatctcccaggagatgcccctgcc