Basic Information
VIS ID
TVIS42000314
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
98045
Orient
+
Integrated sequence
CTGAAGCGAAGCAGCTCCGCCCTCACGGGCCATCTCCGTGAGTTGTTAACCACCCTGGAGACTCTTTACGGTTCATTCTCAGTGGAAGACCTGTTTGGTG| |CCAACTTAAACAGATACGCATGGCATCGCGGGGGCTAGACCTCTGGCTGGATGAGCACGTGTGGAAGAGGAAACAGGAGATTGGTGTGAAAGGAGAAAAT
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
End
10744813/10887303 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/61860; hsa-mir-10400/Downstream/147903;
Nearby gene
LOC112268022(-1162) ; XKR6(+6461) ;
Upstream sequence
CTGTCCAAATGAGCTTTAACTTAGTGTAACTGTGAAGAAAATGTTTAATACTTGATATTACAATTTCACTTTGGTGCCATTTTGTGATGGCTTGTATTAG
Downstream sequence
CGAAGCCATCAATAATGAGCAGGTGCCATGAGGTTAGCGGTTAGCAGGGGGGAGATGTGAGCAACCACATCACAGGGATTGTTGTTATTTTGAAGAGCGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate