Basic Information
VIS ID
TVIS42000317
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
136768
Orient
+
Integrated sequence
CTCCCCAGGAGGTTACTACGCCGGGCCCGCGGGCGGGGACCCGGGTGCCTTCTTGGCGATGGACGCTCACACCTACCACCCCCACCCACACCCCCCTCCG| |GCCTACTTTGGCTTGCCGGGCCTCTTTGGCCCCCCTCCACCCGTGCCTCCTTACTACGGATCCCACTTGCGGGCAGACTACGTCCCCGCTCCCTCGCGAT
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
40057010/40199491 (Hg38)
End
40057010/40199491 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/10242143; hsa-mir-10400/Downstream/1071557;
Nearest TSS
ENST00000518652/Upstream/38033; ENST00000518722/Downstream/111770;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/676477, chr8-CpG: 20/Downstream/698154
Upstream sequence
CTGCCACCAACAGCCTCAGACATGGCCTCCAGCCTCAGATCCACTCATTACTGGCAGGttttttttttgtttttttttttttttgagacagtctctcact
Downstream sequence
CGCATACACAGTGTAAACACATATATATAAGTACAGATAAATATGTACTGCTAAACAAAATGGATTCAGTTTGTTGCTTCTAGCATAAAAAGAAAAAACA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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