Basic Information
VIS ID
TVIS42000323
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
53173
Orient
-
Integrated sequence
GCATGACATATTCCAGAAAGTTGTGGTAGACGGGGATGTAGTTGAGCGGCTCCTGGGTGTCTGCGGAGACGTAGGCCGGGTTAAGGGGGTCGCAGGGAGA| |CTCTGTTTCCAGCCAGAGGGTGCCGGCGTATTTCGCCGGCCCTGCCGCCGCCAGAAATTGTGCCCGCCGGGTCGGGGCTCCATTGCCCCATCCAGTTGGT
Host Sequence
Chromosome
chr8
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
88584447/87572219 (Hg38)
End
88584447/87572219 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/7330746; hsa-mir-10400/Downstream/3633266;
Nearest TSS
ENST00000518652/Upstream/220486; ENST00000518129/Downstream/161624;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/1057175, chr8-CpG: 25/Downstream/301724
Nearby gene
VTA1P2(+3417) ;
Upstream sequence
tgttaccaacttcctggactttctccaattggataggtgaaaaagttgcttattggtgtaattttaatttacatttctcttattttcaatgaggttcagc
Downstream sequence
TATGAACTATGGATATTATTAAAAGATGACTTTGTTTTCATTTTAACACCAGTGCAAATTTCTAAAGTAGGTTTATTCTATGTGTATATAAAGTTATTAC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate