Basic Information
VIS ID
TVIS42000324
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
110510
Orient
-
Integrated sequence
GCAGCGAGTAGCCGAGCGACTGCAGATCCAGGCGAAGGGCCGTCTGCGCCCCCACGGGGCCACACGCCGAGGGGTCAGGGATGTGCCCAGCCCCCCTCAA| |GATGTAGCACTTGCTCAAAAGGCAGAGGGGCTTATAGGTGTCCTTGGCTATAGAAAATGGTTCCCTCTGGCAATAGAGGCGATAGAGCTGCCGGCCCTTA
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
96206400/95194172 (Hg38)
End
96206400/95194172 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8B
Nearest miRNA
hsa-mir-12123/Upstream/121176; hsa-mir-10400/Downstream/3199473;
Nearest TSS
ENST00000518652/Upstream/60096; ENST00000517655/Downstream/10284;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/59671, chr8-CpG: 74/Downstream/74444
Upstream sequence
CCCATCCCTACCCCTAGATTAAGTTTTCTCTatctcaaaaggttgtacactttttggttctatttctgtaggagtctcaaaatgacaaagctagagaata
Downstream sequence
GAGGAGCGCTGCTAGAGAAAACACaggatgcccaagtagtgcatgggacattcttatactaaaagagtatttgttgtttatctgacattccaatttaact
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate