Basic Information
VIS ID
TVIS42000326
Fusion event
EBV-CSMD3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
Virus Sequence
Virus name
EBV
Reference genome
Start
51892
Orient
+
Integrated sequence
ACACGGCCTGGCGTGCAAAGATGGACATCTCTGGCTCGAAAGACTCGGAGTAGCCGTCCAGGTCCTGCAGAAAATTCAGCGAGATGGTCTCCACCAGGGA| |CCGGAAGGGCTCAGAGTGCCCGTCGCAGTAGAGGAGGGGAGCAACGACCCTGACCTGTCCCAGGGTCTTCAGGTTAAACAGATATTGAGAGGAGACAAAG
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
End
113566829/112554600 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12123/Upstream/8070135; hsa-mir-10400/Downstream/88893;
Upstream sequence
tataggtttagcacaattcctacaaaaagctcatcaggaatttttctgcatagagataagattattctaaaatttacatgaaatgcataggatctaatat
Downstream sequence
AACATAGCTGTTTCCCCCCATATTTCTTTGTTATAAAATATTACCTGGCATTTTTGACCTCAAATGAGCCAGTGTCATATGCTGTAGTACTGGAGTTCAT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate