Basic Information
VIS ID
TVIS42000332
Fusion event
EBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
66065
Orient
-
Integrated sequence
CACCAAGGTCACCAACAAGGAGGAGGCCCTTAGGCCAAACCGGTCTTTTTGGCGTCATGTGCGTCTGGATGACAGGGAAGCTTTGAATCTTGTCGGGGGC| |CGTGTCTCCTGCCTCCCGGAGGCTCTGCGGCAGCGCTACCTGCGTTTCCAAACGGCCTTTGATTACAACCAGGAGGACCTGATTCAGATGTCCCGGGACA
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
146193669/144968283 (Hg38)
End
146193669/144968283 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-10400/Upstream/176292;
Nearest TSS
ENST00000518652/Upstream/17395; ENST00000530223/Downstream/24631;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/17332, chr8-CpG: 94/Downstream/34277
Nearby gene
ZNF252P(+5306) ;
Upstream sequence
TCAAGTATCCTGAAAACAGAGGAGGTGAAAATCCAGAAGACAGGGCCACCTATTTCCTCCGTCTGATGATCTAGCCTGTCTTAAACCAGAGGACCACAGT
Downstream sequence
gaattcaaggttatacagagctatgattgtaccactgcactccagcctggacaacagagcaagaccctgtctctgttaaaaaatgaaaaaaaaaaaaaaa
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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