VISDB Viral Integration Site DataBase

VIS ID

TVIS42000334

Fusion event

EBV-CCDC171 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

134603

Orient

-

Integrated sequence

CTTTTCCCCGGGCTGGTTTTGCTGGCCCTGGAGCTGAAGTTGATGGATGGGCAGGCTCCCTCCCATTATGCCATAAACCTGACCGGACAAAAGTTTGACA| |CCCTCTTTGAGATTATCAACCAGAAGCTTTTATTTCACGACCCGGCTGCCATGCTGGCGGCGCGCACACAGCTGCGTCTAGCCTTCGAGGACGGCGTCGG

Chromosome

chr9

Cytoband

p22.3

Reference genome

Start

End

15735259/15735261 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6832-3p ; hsa-mir-4753-3p ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-130b-5p ; hsa-mir-4282 ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-500a-3p ; hsa-mir-642a-5p ; hsa-mir-6804-3p ; hsa-mir-600 ; hsa-mir-3130-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6810-3p ; hsa-mir-6801-3p ; hsa-mir-1306-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-875-5p

Nearest miRNA

hsa-mir-101-2/Upstream/9727357; hsa-let-7a-1/Downstream/2838045;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/181925, chr9-CpG: 30/Downstream/991600

Upstream sequence

tcagcagcatttgacacagttgatttctacctcttgttattatagtttgccataccatactctttattttcttcttctcactgatatttaacttcagtgt

Downstream sequence

tctgcatgattcgctcttctcttgactttcttgactggctgcaagttcacagggctctgttgcaggtctcctcttttctgtatccatacactctccttag