Basic Information
VIS ID
TVIS42000335
Fusion event
EBV-PCA3 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
38239
Orient
+
Integrated sequence
AGGGTAGAGGCGGTTGACATGTAGGTGAGTAGTGTAAGAAGCATGGCGAAGTAGACAGGTTACTTTTAGAGTGTAGTGTACAGGGCCGGGCGCAACAGTG| |CCACCAACCCGGGGTCTGAGCATTCCATGGGCAGCAGGGACACTGCACTACCGCCAGGTCCTGGGGCAGCCGGGGTTCCTGGCGCTCCGGGGGCAGCCGG
Host Sequence
Chromosome
chr9
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
79388495/76773579 (Hg38)
End
79388495/76773579 (Hg38)
Orient
+
Location type
Intronic
Target gene
PCA3
Nearest miRNA
hsa-mir-101-2/Upstream/5963495; hsa-let-7a-1/Downstream/7196169;
Nearest TSS
ENST00000422679/Upstream/9075; ENST00000376708/Downstream/95603;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/313934, chr9-CpG: 75/Downstream/132308
Upstream sequence
gctttttatatctgagtactccggtgctggatatataggtatttataattgttatatcctcttgctaaattggcccctttatcattatataatgaccttt
Downstream sequence
TGAACATGAACTGACATGTCAGGCTGAGGGCTACCCCAAGGCCGAAGTCATCTGGACAAGCAGTGACCATCAAGTCCTGAGTGGTAAGACCACCACCACC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate