Basic Information
VIS ID
TVIS42000336
Fusion event
EBV-LOC107987088 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
166805
Orient
+
Integrated sequence
ATCGGAGTCGGTGGGCGGTCCTCCACGGGGACACGCTCCTTCTTGGCCTTGTTCTTTGACCTTTTGGACATTCTTCTGAAGGAACGGCGGAGAGTAGCGT| |AGAATCCAGCCAGTGGTCTACCCGGTCGCATGGTGGCTTCTTAGATGAGGAGCAGGCATAAAAGTCCAAACAGGACACAGAGTACCACCAGGAGTAGTCT
Host Sequence
Chromosome
chr9
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
87755032/85140117 (Hg38)
End
87755032/85140117 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107987088
Nearest miRNA
hsa-mir-101-2/Upstream/1170260; hsa-let-7a-1/Downstream/3605719;
Nearest TSS
ENST00000422679/Upstream/469457; ENST00000416045/Downstream/438908;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/469328, chr9-CpG: 42/Downstream/382577
Upstream sequence
ctacaatttctttaatcatccatttgtgatggacaaacaaagctcccacaaacattcatatacaagtctgtgtatatgaatgtttatacacagaaaagaa
Downstream sequence
TAGTAAGAGATACTAATGGCTTGTTGTCCAGAGATGTTCAAACTGCAGAGAAAGATAAGACAACAAGCATTGGCCTCCAATCATGATGACAGATAGGAGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate