Basic Information
VIS ID
TVIS42000337
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
135517
Orient
+
Integrated sequence
CGTGCGGTTTCCAGTATTTATCACGGCTTCCCGCCACAGGTAAAAGTTAACACTTAGGGTCAGCAGCTTGGTCAGGGATAGGTGCAAAAACCTGAGCTCG| |TCCTCGCGCAGAGCGCAAAGCGGCCAGTTCTTTAGCATCTTCAGGAGGAGCCCGTGAATCCCAGGTGTCATTCGCGCGTCATCCCCGCGCACCCCCAGTC
Host Sequence
Chromosome
chr9
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
103509318/100747036 (Hg38)
End
103509318/100747036 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/2517819; hsa-mir-12126/Downstream/5853892;
Nearest TSS
ENST00000422679/Upstream/168957; ENST00000494890/Downstream/281673;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/148006, chr9-CpG: 96/Downstream/281294
Upstream sequence
aaactttactgaataaactggaacctcatattaaatgctgccatcaattatgtgggaaaaatcaatccattaccatcaaatattagacatatcttagtaa
Downstream sequence
TTCACTCACAGGCCAGCCAACCTCCCCCAGCCCACCCCGGCATCCGCCCTTGTGGTTTCACACAGGCCTTCCTCACAGGCCAGTGTCCTAATGGGAGACT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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