VISDB Viral Integration Site DataBase

VIS ID

TVIS42000338

Fusion event

EBV-KIAA1958 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

72285

Orient

+

Integrated sequence

ACCAGAAACACCCTCACATTCTTGGAGCTGGCCCTGTGGGTATGCCTCAGGCACGCAAAGTTCCTGCCCCGGGCATGGCACACCTGAACTAAGTTTGGCC| |CGGTTTGCTCAAACGTGACATGGAGAAACTGGGGGAATTTGTCTTCTGGCACAGCTGTTGCCAGGGTGCTCATGAGCGAGGGCCAGATGCAGGAGCTGAC

Chromosome

chr9

Cytoband

q32

Reference genome

Start

End

115354965/112592685 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-889-5p ; hsa-mir-1272 ; hsa-mir-6771-3p ; hsa-mir-7703 ; hsa-mir-500a-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-767-5p ; hsa-mir-4793-3p ; hsa-mir-5186 ; hsa-mir-4756-3p ; hsa-mir-1273g-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4279 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-197-3p ; hsa-mir-4469 ; hsa-mir-1266-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-4667-3p ; hsa-mir-4719 ; hsa-mir-1470 ; hsa-mir-605-5p ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-4740-3p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-4775 ; hsa-mir-4660 ; hsa-mir-32-3p ; hsa-mir-4531 ; hsa-mir-4777-3p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6812-3p

Nearest miRNA

hsa-let-7a-1/Upstream/660516; hsa-mir-12126/Downstream/1616749;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/78942, chr9-CpG: 37/Downstream/125117

Upstream sequence

ACCTCATACCTTAAGTATAGGTATGCTTAAGGATCAGTTAACAAGAGAAATCTAGTAAGTGGCATATCAGGGAAAAAAGAGCTTTTCTTTGAAATGGCAA

Downstream sequence

CACGCTTGGTTTTGCCAGGATGCCCTGCCTCAGCCATGGACACGGGGCTATGGGCAGGTATGTGGTTCTGCTCTGATCGCACCTGCCCACCCCCGAAGGT