Basic Information
VIS ID
TVIS42000339
Fusion event
EBV-chr9 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
43913
Orient
-
Integrated sequence
ATATACCGTGTCTCTGGGGCTGACCTTTATACAGAAGGCGTCCCCTACTAGGTCCACGGCCAGCTCGTAGGTGGGGCCTATGTTTTCACATAACAGTTTC| |AAGCAGGTCTCTGGGATGTGAAGGGAGGTGCCCTGGAGCAGGAGATGCATGATTAGGCGCCCTTTTCCATTTGTGCTGAAGATGGGGCAGATGGTGCCAC
Host Sequence
Chromosome
chr9
Cytoband
q34.13
Reference genome
GRCh37/hg19
Start
134973042/132097655 (Hg38)
End
134973042/132097655 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7a-1/Upstream/1471292; hsa-mir-126/Downstream/848052;
Nearest TSS
ENST00000422679/Upstream/17747; ENST00000372179/Downstream/64021;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/17707, chr9-CpG: 247/Downstream/63671
Nearby gene
LOC105376302(+5565) ;
Upstream sequence
ataaaaggaaccctgaagcctcatgaaggaagaaagaacacaCTGATTTCCTCCATGTCTTCTATGGAAGATTCTGTCCGTCCCACTGGTTTATGGTTTA
Downstream sequence
GCCAGGCGGGCGGCGTTGGTCTCCGCGCAGCTGTTGTAGGCCGACAGGGAGAAGTTGATGTGGGCCTCCATGGGGTTATAGCAGACACCGTAGCCGTCGG
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate