Basic Information
VIS ID
TVIS42000341
Fusion event
EBV-chr9_gl000198_random integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
154906
Orient
+
Integrated sequence
GCAGTACATGCCGAGCCGCCTGCGCCCCTCGGGGCCCGCTGCAAAGAGGCGAGGAATCTCCTTGTAATGCACATCCTCCTTCTTGGCCCCCAGTAGGTGC| |CTGGCTACTGTGTCCAGCTTGTAGTCTGAGAGGCTGAGCTTGTCCCGGCACACGGCGTACATGTCGATGGGGATGAGGCCGGTGATGCGGACCTTGGTGT
Host Sequence
Chromosome
chr9
Reference genome
GRCh37/hg19
Start
69661/29027907 (Hg38)
End
69661/29027907 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9C
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Upstream sequence
tgctggctgttggctgaagatgtttccagcttctagaggccatttgtgttccttagctctttattcccttccaccatattcaaagcaaacaatgatggac
Downstream sequence
TTGCTGAAACACTACCCAGTTCAGAGTAAAACAAATTTCCTATTTTATCAAATCATTGAATGCCATTTAAAATTCAGAATACTTGCAGAGATCCCAAATA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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