Basic Information
VIS ID
TVIS42000343
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
114502
Orient
-
Integrated sequence
GAGGGTAACATTCATGTAGGTTTTAGGAGGTCCGGCTATCTGAGGCACGTACACAGCTGACACGGCGGTTGTGGCCGTATAGACTTTCATCTGGGGCGTA| |GAGGCATCGCTCAGCACCCAGAGGCACTCCTTGTTGAGGAACTTGCGAAGCTGTTCCCGGCTACTGTTCGCGGCGGATGCCATGACGTGCCAGAATATAT
Host Sequence
Chromosome
chrX
Cytoband
p22.32
Reference genome
GRCh37/hg19
Start
4783317/4865276 (Hg38)
End
4783317/4865276 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3690-1/Upstream/2256022; hsa-let-7f-2/Downstream/1518630;
Nearest TSS
ENST00000429181/Upstream/231704; ENST00000217961/Downstream/860681;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/944254, chrX-CpG: 21/Downstream/1027690
Upstream sequence
TAGGGACACAACTAAATATATTTTAACTAAGGTTTATTGAGAGAGAGAGAGAATTACTTGTACAAAGTCTTTTCTGCATTGTATCAATATTATGGTGTCA
Downstream sequence
tattcatatatatattcatctatatgcatatacaatcataagtatatacataaattatgcataATCAAATGATGCACTTTTGCATGTGTGTCTAATGTCT
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate