Basic Information
VIS ID
TVIS42000344
Fusion event
EBV-LOC107985675 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
90294
Orient
+
Integrated sequence
CCGATTCTTGTATCGCTTTATTTCTAGTTCAGAATCGCATTCCTCCAGCTGCGAGCAAGGGAATGCGTTACTACAAGTGGTGCCTAGTCAGTTGAAACAA| |GCCCCACCATCCGCTGCCGCCCCTCCATGAGCCCCACCGTCCGCTGCCGCCCCTCCTTGAGCCCCTCCTTACCGATTCTGGCTGTTGTGGTTTCCGTGTG
Host Sequence
Chromosome
chrX
Cytoband
p22.31
Reference genome
GRCh37/hg19
Start
8241439/8273398 (Hg38)
End
8241439/8273398 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985675
Nearest miRNA
hsa-mir-3690-1/Upstream/146337; hsa-let-7f-2/Downstream/3045216;
Nearest TSS
ENST00000429181/Upstream/102131; ENST00000453306/Downstream/191432;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/345831, chrX-CpG: 144/Downstream/457418
Upstream sequence
gcttcccgtctgccatgatcctcCcacaaattcataaactttcttaaaacattatgagagttttttgtgggtttttttttttttttttttttttagctca
Downstream sequence
AAAGCTTTGGATTGTTTTCTCACTGTGGGTATCCAGATACCTCAGTCTCAAAACATTGCAGcctgtctaggaagggaaggcattcctaattttggtaggt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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