Basic Information
VIS ID
TVIS42000345
Fusion event
EBV-LINC01203 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
10506
Orient
-
Integrated sequence
CAGCACATTTTGTTCTAGGTCCATCTTAGGAGCCCGGGCCAGCATTCTATCAGCTTAACGGGAAGAGAAGTGGGGAGGGCACTCGCCCACTAACCTTAAC| |ACCTGCAGCCTACAAAAGTACACTAGCTGTTTGCTCTATTCGCCACTAGAGACCGCCAAGATGCGAAACTACAGGCCCGGGCCCAGGCCTTGCAGGGCAG
Host Sequence
Chromosome
chrX
Cytoband
p22.2
Reference genome
GRCh37/hg19
Start
13358992/13340873 (Hg38)
End
13358992/13340873 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01203
Nearest miRNA
hsa-mir-3690-1/Upstream/2022187; hsa-let-7f-2/Downstream/249419;
Nearest TSS
ENST00000429181/Upstream/4492; ENST00000420403/Downstream/36315;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/364393, chrX-CpG: 52/Downstream/37896
Upstream sequence
TGTTTCAAATCGCTTCTCCGAATACCTTCTGGAGTGCCCTAGTGCAGAAGTGAGGGGTGCGTTTGCAAAACTTATAGTCTTTATTGCACATTTTTCCTTG
Downstream sequence
TTTTACAAACATTAATTAAGCTTATGTAGCTCCCTGGTGGGCTTAGGCAGAAAGAATGCCCAGAGAGAGAGAGTTTCCGCTTTTCCTCCAAGCCACAGAA
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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