Basic Information
VIS ID
TVIS42000346
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
53976
Orient
+
Integrated sequence
CCGTTCCCGGCCGCTGCCCGGGCCAGGGCGGCCTCGAGGGGAGCCTGGACAGGGGCTTTGGGCGGGGAGGGAAGCAGGCTCCGGAGTTCATCGTCGGGGG| |CTTCGTCGCGTGACCTGGAGAGGACGGCCTCCAGAGCCGTGTGAAAGCCCCGCCGAGTGCTTGCCGCCATCTCGTGGGCCTTCGCCATCAGGGTCTGGCT
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
61909851/62690381 (Hg38)
End
61909851/62690381 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/7238799; hsa-mir-105-1/Downstream/1095621;
Nearest TSS
ENST00000429181/Upstream/4779561; ENST00000451979/Downstream/659265;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/4779894, chrX-CpG: 51/Downstream/660692
Upstream sequence
CTGCTTGGAGATGTCACAAAGGTTGGGTGAGGGTACAGAGATCACACTAGGAGGAAAACTGGTTAAGCTAACAGGACTCCACTTGGACAGGAAGGGATTG
Downstream sequence
gaaacttctttgtgacttgggcattcaactcaaagaggtacccatttcttttcattgtgcgtattggaaactcttttcttgtagagtctgcaaagggata
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate