Basic Information
VIS ID
TVIS42000347
Fusion event
EBV-MIR325HG integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
148403
Orient
-
Integrated sequence
CATCGTTTCCTGAACTACAGGCGTAGGGCCTATTGTAGCAGGCATGTCTTCATTCCTGCGTACCGAATGGCATGAAGGCACAGCCTGTTACCATTGGCAC| |CTTTTTTCCATGTAAACCTCCGTGATCCTGGGTCCTTTGGAGACTCAAGTGTGAATTTGTTTTGGTGTTCGGCGCCAGGGTATCTCGACGTTGGAATGTC
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
76191291/76970866 (Hg38)
End
76191291/76970866 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR325HG
Nearest miRNA
hsa-let-7f-2/Upstream/51506; hsa-mir-105-1/Downstream/34538;
Nearest TSS
ENST00000429181/Upstream/543142; ENST00000439435/Downstream/43417;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/541726, chrX-CpG: 71/Downstream/476603
Upstream sequence
GGTTATCTCGATtatatatacatttataaaatatagtaatatatggaataaacctgtctatacatatacatacatattagtatatgtccacatatgtgca
Downstream sequence
GCTAATGGGTCTACATGACGAATATATAAGATTCCACCATTCTCCTGTCACTCGATACTTAAAAACCTGGAGGAAATAACTGGATCAAAGCCTGTAAATC
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
Curate