VISDB Viral Integration Site DataBase

VIS ID

TVIS42000348

Fusion event

EBV-FAM199X integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Nasopharyngeal carcinoma (NPC)

Quality evaluation

Normal

Reported year

2005

PubMed ID

Virus name

EBV

Reference genome

Start

122917

Orient

+

Integrated sequence

GTCTCCGTTAACCCGGTAGCCGTACAAGGCCACAAATTGGGCAGCCATCTCATCCATGTTTCCAACCCTCTCAATAAACTGGGGCGCGGCCAGGGTGTCA| |GCGTAAACCTCATTTCCGATAATAATCTGGGGGGCCCGGTCACTAACGGTGAGAAGATGGGTGAAAATGTCTGTGTAGGCCACCGGGGGGAGCAGGTTAG

Chromosome

chrX

Cytoband

q22.2

Reference genome

Start

End

103428622/104183941 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-132-3p ; hsa-mir-124-3p ; hsa-mir-192-5p ; hsa-mir-106b-5p ; hsa-mir-125b-5p ; hsa-mir-382-5p ; hsa-mir-4762-3p ; hsa-mir-6790-5p ; hsa-mir-4658 ; hsa-mir-4303 ; hsa-mir-4798-5p ; hsa-mir-3659 ; hsa-mir-574-5p ; hsa-mir-1253 ; hsa-mir-627-3p ; hsa-mir-4682 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-6802-3p ; hsa-mir-6832-3p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-2278 ; hsa-mir-3184-3p

Nearest miRNA

hsa-let-7f-2/Upstream/9120715; hsa-mir-105-1/Downstream/2455873;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/16830, chrX-CpG: 34/Downstream/66388

Upstream sequence

CATTCCTGACTTGGGTCCAGGAATACATCAATAGCAGCCTCCCACCTTCAACAGGGATGTGGAAGTGGCACAGGTACCAGTTCTTAATTCCCAAACATAA

Downstream sequence

GCATAGTGATTGACTCCTATCTTTGTGGTTTCATGTATTTCTTTGTGATTGATTCCCCAGTGCCTGCCTGCAGTCCATTGCAACTCTCCCAAACTTTAAT