Basic Information
VIS ID
TVIS42000349
Fusion event
EBV-chrX integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Cell line
Disease
Nasopharyngeal carcinoma (NPC)
Quality evaluation
Normal
Reported year
2005
PubMed ID
15681063
Virus Sequence
Virus name
EBV
Reference genome
NC007605
Start
147540
Orient
+
Integrated sequence
ACCTGCCTTGGGTTACTATTCCAAACGACCACACCTTTGAGGACACCTGGAGCCCTGATCATTCTCGGCTTTTACTGCCACCTGGCTTCTGTTGGGTCAG| |ACAGTTTGGTGCGCTAGTTGTGTGCTTAGCAGCAACGCACACCAGGCTGACTGCCTTAGCAGTGTGGCCCTTTATTGTGGCATCCTAAGGAGGGATTCTG
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
115817345/116683377 (Hg38)
End
115817345/116683377 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1859813; hsa-mir-105-1/Downstream/1703017;
Nearest TSS
ENST00000429181/Upstream/220374; ENST00000493448/Downstream/10811;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/714313, chrX-CpG: 74/Downstream/1432893
Nearby gene
LOC100422432(-5104) ; LOC100462652(+5453) ;
Upstream sequence
CTCAAGACTAGTTAAGACAGCTAATGTGTGGATGCAGTTTCGAAAACAATACTTTTCATAGCAGTGGTTTGAGCTAATGGTGTTTTTCATCTCAAAAATG
Downstream sequence
tattttttgactttgtactaatagccattctgactgatgtgaaattatatctcattgtggttttgatttgcatttctcaagtgattagtgatgagctttt
Reference
Takakuwa, T., et al. Identification of Epstein-Barr virus integrated sites in lymphoblastoid cell line (IB4). Virus Res,2005, 108(1-2): 133-138.
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